Pomoc - ClustalW2


Launch

The vendor and version from the JVM:

You should see a pink box above with one line of text that says = something like:


Java =ersion: 1.1.4 from Microsoft Corp.  or
Java Version 1.4.2_05 from =un Microsystems Inc.  or
Java Version: 1.3.1 from =pple Computer, Inc.   or
Java Version: 1.1.5 from Netscape Communications Corporation

For actual results, see expected output.



Example of enabling =ava in Internet Explorer (Windows)

windows

Examples of Enabling Java in Firefox =Windows/Linux)

mozilla

mozilla

Example of Enabling java in Mozilla (Windows)

mozilla

Example of Enabling java in Safari (Mac)

safari

example:

Right-click =n the area below for options! 



IMPORTANT:
To use this =ption you 
  will need to input a sequence alignment. Please make sure this =lignment is in 
  PIR or PHYLIP format. ALN and GCG MSF files are not supported so you =ill have 
  to convert your MSF files to PIR format with, for example, GCG's =oPir: 
  



  

topir pileup.msf{*} -outf=pileup.pir 


Please refer to the GCG =ocumentation 
  to find out how to use this program correctly. You may then use this =ile as 
  input (cut and paste or upload) to this service. 
The method used =s the NJ 
  (Neighbour Joining) method of Saitou and Nei. First you calculate =istances 
  (percent divergence) between all pairs of sequence from a multiple =lignment; 
  second you apply the NJ method to the distance matrix. 
This option =llows 
  you to choose the following output formats for the tree:

  In order to view these trees you must =ave a 
  program capable of displaying the data. Please refer to this pages =ection on 
  OUTPUT=for 
  more information.

























=BR>